This support article requires the Invoice Templates addon from the Neto addon store.
The system allows you to add multiple eBay accounts and the option to use unique invoice templates with different email accounts.
To achieve this you will first need to create custom invoice template.
From the Neto dashboard, navigate to Setup & tools > All settings & tools.
Click on the System Templates tab and click Custom Invoice Templates.
Click Add New Document Template.
You can then create email and company alias so each ebay store looks independent of the other.
The Invoice/Order Template is the only one that needs to be customised as it is used as the email upon order dispatch from the system.
Once you have created a new document template set you assign it to your eBay account.
To do this, navigate to eBay > Setup & Tools > Store Manager.
Click on the eBay account you wish to edit.
Under Document Template, select your new document template from drop down.